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J Neurophysiol 101: 1679-1689, 2009. First published December 24, 2008; doi:10.1152/jn.90989.2008
0022-3077/09 $8.00
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INNOVATIVE METHODOLOGY

Using a Common Average Reference to Improve Cortical Neuron Recordings From Microelectrode Arrays

Kip A. Ludwig1, Rachel M. Miriani1, Nicholas B. Langhals1, Michael D. Joseph1, David J. Anderson2,3 and Daryl R. Kipke1

1Department of Biomedical Engineering, 2Professor Emeritus of Biomedical Engineering, and 3 Professor Emeritus of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, Michigan

Submitted 3 September 2008; accepted in final form 15 December 2008

Abstract

In this study, we propose and evaluate a technique known as common average referencing (CAR) to generate a more ideal reference electrode for microelectrode recordings. CAR is a computationally simple technique, and therefore amenable to both on-chip and real-time applications. CAR is commonly used in EEG, where it is necessary to identify small signal sources in very noisy recordings. To study the efficacy of common average referencing, we compared CAR to both referencing with a stainless steel bone-screw and a single microelectrode site. Data consisted of in vivo chronic recordings in anesthetized Sprague-Dawley rats drawn from prior studies, as well as previously unpublished data. By combining the data from multiple studies, we generated and analyzed one of the more comprehensive chronic neural recording datasets to date. Reference types were compared in terms of noise level, signal-to-noise ratio, and number of neurons recorded across days. Common average referencing was found to drastically outperform standard types of electrical referencing, reducing noise by >30%. As a result of the reduced noise floor, arrays referenced to a CAR yielded almost 60% more discernible neural units than traditional methods of electrical referencing. CAR should impart similar benefits to other microelectrode recording technologies—for example, chemical sensing—where similar differential recording concepts apply. In addition, we provide a mathematical justification for CAR using Gauss-Markov theorem and therefore help place the application of CAR into a theoretical context.


Address for reprint requests and other correspondence: K. A. Ludwig, Univ. of Michigan, 1101 Beal Ave., 2247 LBME, Ann Arbor, MI 48109 (E-mail: ludwi1ka{at}gmail.com or dkipke{at}umich.edu)







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