JN AJP: Lung Cellular and Molecular Physiology
HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
 QUICK SEARCH:   [advanced]


     


J Neurophysiol 87: 1129-1131, 2002;
0022-3077/02 $5.00
This Article
Right arrow Abstract Freely available
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Right arrow Citation Map
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Web of Science (48)
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Golowasch, J.
Right arrow Articles by Marder, E.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Golowasch, J.
Right arrow Articles by Marder, E.

The Journal of Neurophysiology Vol. 87 No. 2 February 2002, pp. 1129-1131
Copyright ©2002 by the American Physiological Society

RAPID COMMUNICATION

Failure of Averaging in the Construction of a Conductance-Based Neuron Model

Jorge Golowasch,1 Mark S. Goldman,1,2 L. F. Abbott,1 and Eve Marder1

 1Volen Center for Complex Systems and Department of Biology, Brandeis University, Waltham 02454; and  2Department of Physics, Harvard University, Cambridge, Massachusetts 02138


    ABSTRACT
TOP
ABSTRACT
INTRODUCTION
METHODS
RESULTS
DISCUSSION
REFERENCES

Golowasch, Jorge, Mark S. Goldman, L. F. Abbott, and Eve Marder. Failure of Averaging in the Construction of a Conductance-Based Neuron Model. J. Neurophysiol. 87: 1129-1131, 2002. Parameters for models of biological systems are often obtained by averaging over experimental results from a number of different preparations. To explore the validity of this procedure, we studied the behavior of a conductance-based model neuron with five voltage-dependent conductances. We randomly varied the maximal conductance of each of the active currents in the model and identified sets of maximal conductances that generate bursting neurons that fire a single action potential at the peak of a slow membrane potential depolarization. A model constructed using the means of the maximal conductances of this population is not itself a one-spike burster, but rather fires three action potentials per burst. Averaging fails because the maximal conductances of the population of one-spike bursters lie in a highly concave region of parameter space that does not contain its mean. This demonstrates that averages over multiple samples can fail to characterize a system whose behavior depends on interactions involving a number of highly variable components.


    INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
METHODS
RESULTS
DISCUSSION
REFERENCES

Measurements of neuronal conductances often exhibit a large degree of variability (Gardner 1993; Golowasch et al. 1999; Liu et al. 1998). It is customary to characterize such data using means and variances. For example, mean conductance values are typically used to set the parameters of a model constructed to simulate neuronal activity. If the resulting model fails to capture the behavior of the neuron being modeled, the parameters are normally adjusted within a region characterized by the variances of the measured values. It has been suggested previously that such a program can fail (Beer et al. 1999; Foster et al. 1993; Goldman et al. 2001). Here we present an example that illustrates this problem and suggests when it will occur. We use a population of model neurons as our data and show that a model built with parameters set to averages of the corresponding conductances, or to most of the values within a 1 SD covariance ellipse about the mean, fails to match the behavior of the neurons that were used to generate the data. In this example, averaging fails not as a result of measurement error, but because the distribution of data points is poorly characterized by its mean and variance or even other higher order statistical measures. Specifically, the mean and most of the 1 SD covariance ellipse do not lie within the distribution from which they are computed.


    METHODS
TOP
ABSTRACT
INTRODUCTION
METHODS
RESULTS
DISCUSSION
REFERENCES

Electrophysiology

Experimental methodology follows that described previously (Golowasch et al. 1999). We used two-electrode voltage clamp to measure the peak conductances of three K+ currents (IKd, IKCa, and IA) expressed in isolated inferior cardiac (IC) neurons of the stomatogastric ganglion of the crab Cancer borealis. The IC neuron was isolated by adding 10-5 M picrotoxin (PTX) and 10-7 M tetrodotoxin (TTX) to the bath. Peak conductances were calculated at +20 mV, assuming a potassium reversal potential of -80 mV. Currents were separated as described previously (Golowasch et al. 1999).

Model description

A single compartment conductance-based model was built using standard Hodgkin-Huxley equations to describe five voltage-dependent conductances (Na+ conductance, gNa; delayed-rectifier K+ conductance, gKd; A-type K+ conductance, gA; Ca2+-activated K+ conductance, gKCa; and Ca2+ conductance, gCa) and a fixed voltage-independent leak current. The kinetics and voltage dependence of these conductances are based on measurements performed on cultured stomatogastric ganglion (STG) neurons (Turrigiano et al. 1995) and are exactly as described in Liu et al. (1998). In our model, we fixed the ratio of the maximal conductances of the fast and slow Ca2+ currents (CaT and CaS in Liu et al. 1998) at 1.25. Values reported are for the fast component only. Buffering of Ca2+ (used in computing IKCa) follows the model described previously (Liu et al. 1998), but with a buffering time constant of 200 ms.

We chose maximum conductances for the currents randomly from uniform distributions over the ranges (in mS/cm2): gmaxNa, 0-800; gmaxKd, 0-200; gmaxCa, 0-5; gmaxA, 0-75; gmaxKCa, 0-300; gLeak, fixed at 0.01. These distributions all have SD to mean ratios of 1/radical 3, which sets the scale for the variability seen in the model. The model was integrated numerically using a second-order accurate, stable method with adaptive step size.


    RESULTS
TOP
ABSTRACT
INTRODUCTION
METHODS
RESULTS
DISCUSSION
REFERENCES

Each class of identified neurons of the crustacean STG displays a characteristic and stereotyped firing pattern. Nonetheless, voltage-clamp measurements of three K+ currents show a three- to fourfold variability in peak conductance (Fig. 1). To mimic the variability seen in such conductance data, we built 2,000 model neurons by randomly choosing sets of maximal conductances (Bhalla and Bower 1993; Foster et al. 1993; Goldman et al. 2001) for the 5 voltage-dependent currents of the model (METHODS). We classified the resulting patterns of activity as silent, tonically firing action potentials, or bursting with a certain number of spikes per burst. From these runs, we found that 164 model neurons fire one spike per burst, and we used these as our set of "identified one-spike bursting neurons" (Fig. 2A, traces 1-3 represent 3 examples). The one-spike bursters display similar firing patterns (Fig. 2A, left) despite having very different maximal conductances (Fig. 2A, right).



View larger version (12K):
[in this window]
[in a new window]
 
Fig. 1. Variation in the peak conductances of 3 K+ conductances for a neuron of the crab stomatogastric ganglion (STG). Peak conductances measured in the inferior cardiac (IC) neuron of 22 different preparations vary over a factor of 3.1 for gKd, 4.0 for gKCa, and 2.9 for gA. Means and SDs for the 3 conductances are as follows: gKd = 0.77 ± 0.27 nS, gKCa = 6.05 ± 2.15 nS, gA = 1.58 ± 0.50 nS. A subset of these data has been published in different form previously in Golowasch et al. (1999).



View larger version (20K):
[in this window]
[in a new window]
 
Fig. 2. Failure of averaging in a conductance-based model neuron. A, left panels: voltage traces for 3 observed one-spike bursters. Conductance values in mS/cm2: 1, gmaxNa = 400, gmaxKd = 20.0; 2, gmaxNa = 50.0, gmaxKd = 20.0; 3, gmaxNa = 50.0, gmaxKd = 100; all 3, gmaxCa = 4.0, gmaxA = 5.0, gmaxKCa = 250. B: neuron generated from the average conductances of all the one-spike bursters (gmaxNa = 283, gmaxKd = 38.0, gmaxCa = 3.45, gmaxA = 26.2, gmaxKCa = 146). The insets are 50 ms in width and have tick marks at -30 mV. Right panels: histograms showing the values of the Na+ and 4 times the delayed-rectifier K+ maximal conductances.

We used the conductance data from these one-spike bursters to represent recordings from the same identified neuron in different preparations. Conventionally, these data would be used to construct a single model neuron with maximal conductances equal to the averages of the measured values. Following this procedure, we built a model neuron using the average maximal conductances of our 164 model neuron set. Surprisingly, this average model is not itself a one-spike burster, but instead is a three-spike burster (Fig. 2B). Moreover, we found that only 28% of 500 additional model neurons constructed from randomly sampled points within the 1 SD ellipse defined by the covariances of the sampled one-spike bursters were themselves one-spike bursters (a 2-dimensional projection of this ellipse is shown in Fig. 3A).



View larger version (51K):
[in this window]
[in a new window]
 
Fig. 3. Single and multiple spike bursters. A: number of spikes per burst (0, black; 1, blue; 2, green; 3, olive; 4, orange; 5, burgundy) for bursting neurons with the indicated values of gmaxNa and gmaxKd. The difference in dot sizes is for ease of visualization only. One-spike bursters (blue) lie in an L-shaped region that does not include its mean (red square with cross, which generates the activity seen in Fig. 2B) or most of its 1 SD covariance ellipse (black oval curve; individual conductance SDs in mS/cm2 are sigma Na = 241; sigma Kd = 50.6; sigma Ca = 1.18; sigma A = 20.1; sigma KCa = 88.6). Bursters with more than 1 spike per burst appear randomly distributed in this 2-dimensional projection. Labeled cells (red numbers 1-5) correspond to voltage traces in Fig. 2A and Fig. 3B. B: voltage traces for 2 neurons (a two-spike burster and a four-spike burster) with conductances lying within 1 SD of the mean (conductance values in mS/cm2: 4, gmaxNa = 229, gmaxKd = 60.2, gmaxCa = 2.72, gmaxA = 36.0, gmaxKCa = 158; 5, gmaxNa = 296, gmaxKd = 26.4, gmaxCa = 2.89, gmaxA = 15.5, gmaxKCa = 90.6). The insets are 50 ms in width and have tick marks at -30 mV. C: distribution histograms showing the number of one spike bursting neurons with the indicated amount of gmaxNa (left) or gmaxKd (right).

Figure 3 illustrates why averaging fails in this case. Figure 3A shows the Na+ maximal conductance, gmaxNa, and the delayed rectifier K+ maximal conductance, gmaxKd, of all of the bursting neurons from the 2,000 runs of the model. The one-spike bursters (Fig. 2A) are shown in blue, while multiple-spike bursters (Fig. 3B) are colored according to their number of spikes. The one-spike bursters are defined almost exclusively by low values of gmaxNa and/or gmaxKd (Figs. 2A and 3A). As a result, their maximal conductances lie in an L-shaped (concave) region. Consequently, in this data set, the mean (red square with cross in Fig. 3A) and most of the points within 1 SD of the mean (black ellipse in Fig. 3A) fall outside the concave region defining the one-spike bursters. Figure 3C shows distributions for gmaxNa and gmaxKd alone and demonstrates that the 164 one-spike bursters do not fall into 2 separate classes on the basis of single-conductance measurements.


    DISCUSSION
TOP
ABSTRACT
INTRODUCTION
METHODS
RESULTS
DISCUSSION
REFERENCES

The essential feature that leads to the failure of averaging in this study is the concave, L-shaped region of parameter space occupied by the one-spike bursters. This shape defines a nonlinear relationship between the values of gmaxNa and gmaxKd that is not captured by standard statistical measures such as means and variances (Fig. 3A). The averaged model (Fig. 2B) fails because the process of averaging does not account for this nonlinear relationship (Beer et al. 1999; Foster et al. 1993; Goldman et al. 2001). Variances fail to describe the relationship between gmaxNa and gmaxKd because they only characterize variability of linear combinations of parameters that are assumed to be independent. Multimodal distributions of individual variables might serve as an indication that averaging may fail. However, unimodal distributions, such as those in Fig. 3C or even normal distributions, can lead to a failure of averaging, due to correlations not revealed by the individual distributions. This happens, for example, if the values near the mean of one variable are correlated with values within the tails of the distribution for a second variable.

Capturing the nonlinear relationships between system components may be essential for understanding system function in many biological systems. In the case of our model, individual measurements of gmaxNa in one group of cells and of gmaxKd in another group only reveal a tendency for each conductance to have low values (Fig. 3C). Simultaneous measurements of these conductances in each cell studied (Fig. 3A) reveal that gmaxNa and gmaxKd act together as a switch between single- and multi-spike bursting, with multi-spike bursting arising only when gmaxNa and gmaxKd are both sufficiently large (enough fast inward Na+ current to produce a 2nd action potential within the burst and enough fast outward K+ current to repolarize the cell, allowing the 2nd action potential to be produced).

The issues raised by this paper are not specific to biophysical measurements of conductances in neurons or to the construction of neuronal models; they may be relevant to understanding many complex biological systems (Koch and Laurent 1999; Weng et al. 1999). We do not know how frequently averaging will fail in complex systems, but it may occur more often than is typically suspected (Beer et al. 1999; Chiel et al. 1999; Foster et al. 1993). Perhaps some of the fine tuning required to make models reproduce experimentally observed activity may be correcting for failures of averaging rather than measurement errors. Of course, using averaged parameters in models often works well. In our example, averaging fails for one-spike bursters but works for multiple-spike bursters in the sense that a model built by averaging parameters over all n-spike bursters (for n > 1) produces n spikes per burst.

Averaging will fail whenever the mean of the distribution of relevant data points lies outside the region they occupy. Standard statistical measures do not indicate when this occurs because they do a poor job of characterizing the boundary of a region. However, scatter plots of the relevant parameters, as used here, should be sufficient to reveal a failure of averaging by showing regional boundaries. To characterize a system when averaging fails, it is critical to measure multiple system components together in the same preparation, even though this may be technically challenging. When simultaneous measurements are not available, modeling studies can help uncover the relationships between model parameters that must be characterized to account for observed system behavior.


    ACKNOWLEDGMENTS

This work was supported by National Institute of Mental Health Grant MH-46742, the Sloan-Swartz Center for Theoretical Neurobiology at Brandeis University, and the W. M. Keck Foundation.

Present address of M. S. Goldman: Brain and Cognitive Sciences, MIT, E25-210, Cambridge, MA 02139.


    FOOTNOTES

Present address and address for reprint requests: J. Golowasch, Rutgers University, Dept. of Biological Sciences, 101 Warren St., Newark, NJ 07102 (E-mail: golowasch{at}stg.rutgers.edu).

Received 18 May 2001; accepted in final form 5 October 2001.


    REFERENCES
TOP
ABSTRACT
INTRODUCTION
METHODS
RESULTS
DISCUSSION
REFERENCES

0022-3077/02 $5.00 Copyright © 2002 The American Physiological Society



This article has been cited by other articles:


Home page
Adaptive BehaviorHome page
R. D. Beer and P. L. Williams
Animals and Animats: Why Not Both Iguanas?
Adaptive Behavior, August 1, 2009; 17(4): 296 - 302.
[PDF]


Home page
J. Neurosci.Home page
A. L. Taylor, J.-M. Goaillard, and E. Marder
How Multiple Conductances Determine Electrophysiological Properties in a Multicompartment Model
J. Neurosci., April 29, 2009; 29(17): 5573 - 5586.
[Abstract] [Full Text] [PDF]


Home page
J. Physiol.Home page
N. Keren, D. Bar-Yehuda, and A. Korngreen
Experimentally guided modelling of dendritic excitability in rat neocortical pyramidal neurones
J. Physiol., April 1, 2009; 587(7): 1413 - 1437.
[Abstract] [Full Text] [PDF]


Home page
J. Neurophysiol.Home page
E. Hong, F. Gurel Kazanci, and A. A. Prinz
Different Roles of Related Currents in Fast and Slow Spiking of Model Neurons From Two Phyla
J Neurophysiol, October 1, 2008; 100(4): 2048 - 2061.
[Abstract] [Full Text] [PDF]


Home page
J. Neurophysiol.Home page
K. H. Hobbs and S. L. Hooper
Using Complicated, Wide Dynamic Range Driving to Develop Models of Single Neurons in Single Recording Sessions
J Neurophysiol, April 1, 2008; 99(4): 1871 - 1883.
[Abstract] [Full Text] [PDF]


Home page
J. Neurophysiol.Home page
B. J. Norris, A. L. Weaver, A. Wenning, P. S. Garcia, and R. L. Calabrese
A Central Pattern Generator Producing Alternative Outputs: Pattern, Strength, and Dynamics of Premotor Synaptic Input to Leech Heart Motor Neurons
J Neurophysiol, November 1, 2007; 98(5): 2992 - 3005.
[Abstract] [Full Text] [PDF]


Home page
J. Neurosci.Home page
J. Ausborn, W. Stein, and H. Wolf
Frequency Control of Motor Patterning by Negative Sensory Feedback
J. Neurosci., August 29, 2007; 27(35): 9319 - 9328.
[Abstract] [Full Text] [PDF]


Home page
J. Neurosci.Home page
O. Khorkova and J. Golowasch
Neuromodulators, Not Activity, Control Coordinated Expression of Ionic Currents
J. Neurosci., August 8, 2007; 27(32): 8709 - 8718.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
D. J. Schulz, J.-M. Goaillard, and E. E. Marder
Quantitative expression profiling of identified neurons reveals cell-specific constraints on highly variable levels of gene expression
PNAS, August 7, 2007; 104(32): 13187 - 13191.
[Abstract] [Full Text] [PDF]


Home page
J. Neurophysiol.Home page
B. Mulloney and W. M. Hall
Not by Spikes Alone: Responses of Coordinating Neurons and the Swimmeret System to Local Differences in Excitation
J Neurophysiol, January 1, 2007; 97(1): 436 - 450.
[Abstract] [Full Text] [PDF]


Home page
J. Exp. Biol.Home page
D. J. Schulz
Plasticity and stability in neuronal output via changes in intrinsic excitability: it's what's inside that counts
J. Exp. Biol., December 15, 2006; 209(24): 4821 - 4827.
[Abstract] [Full Text] [PDF]


Home page
ScienceHome page
A. V. M. Herz, T. Gollisch, C. K. Machens, and D. Jaeger
Modeling single-neuron dynamics and computations: a balance of detail and abstraction.
Science, October 6, 2006; 314(5796): 80 - 85.
[Abstract] [Full Text] [PDF]


Home page
J. Neurophysiol.Home page
A.-E. Tobin and R. L. Calabrese
Endogenous and Half-Center Bursting in Morphologically Inspired Models of Leech Heart Interneurons
J Neurophysiol, October 1, 2006; 96(4): 2089 - 2106.
[Abstract] [Full Text] [PDF]


Home page
J. Neurophysiol.Home page
A.-E. Tobin, S. D. Van Hooser, and R. L. Calabrese
Creation and Reduction of a Morphologically Detailed Model of a Leech Heart Interneuron
J Neurophysiol, October 1, 2006; 96(4): 2107 - 2120.
[Abstract] [Full Text] [PDF]


Home page
J. Neurophysiol.Home page
Q. J. M. Huys, M. B. Ahrens, and L. Paninski
Efficient Estimation of Detailed Single-Neuron Models
J Neurophysiol, August 1, 2006; 96(2): 872 - 890.
[Abstract] [Full Text] [PDF]


Home page
J. Neurophysiol.Home page
A. L. Taylor, T. J. Hickey, A. A. Prinz, and E. Marder
Structure and Visualization of High-Dimensional Conductance Spaces
J Neurophysiol, August 1, 2006; 96(2): 891 - 905.
[Abstract] [Full Text] [PDF]


Home page
J. Neurophysiol.Home page
N. Keren, N. Peled, and A. Korngreen
Constraining Compartmental Models Using Multiple Voltage Recordings and Genetic Algorithms
J Neurophysiol, December 1, 2005; 94(6): 3730 - 3742.
[Abstract] [Full Text] [PDF]


Home page
J. Neurophysiol.Home page
P. Rabbah, J. Golowasch, and F. Nadim
Effect of Electrical Coupling on Ionic Current and Synaptic Potential Measurements
J Neurophysiol, July 1, 2005; 94(1): 519 - 530.
[Abstract] [Full Text] [PDF]


Home page
J. Neurosci.Home page
A. M. Swensen and B. P. Bean
Robustness of Burst Firing in Dissociated Purkinje Neurons with Acute or Long-Term Reductions in Sodium Conductance
J. Neurosci., April 6, 2005; 25(14): 3509 - 3520.
[Abstract] [Full Text] [PDF]


Home page
J. Neurosci.Home page
D. Bucher, A. A. Prinz, and E. Marder
Animal-to-Animal Variability in Motor Pattern Production in Adults and during Growth
J. Neurosci., February 16, 2005; 25(7): 1611 - 1619.
[Abstract] [Full Text] [PDF]


Home page
J. Neurophysiol.Home page
A. A. Prinz, C. P. Billimoria, and E. Marder
Alternative to Hand-Tuning Conductance-Based Models: Construction and Analysis of Databases of Model Neurons
J Neurophysiol, December 1, 2003; 90(6): 3998 - 4015.
[Abstract] [Full Text] [PDF]


Home page
J. Neurophysiol.Home page
A. L. Weaver and S. L. Hooper
Relating Network Synaptic Connectivity and Network Activity in the Lobster (Panulirus interruptus) Pyloric Network
J Neurophysiol, October 1, 2003; 90(4): 2378 - 2386.
[Abstract] [Full Text] [PDF]


Home page
J. Neurosci.Home page
Z. M. Khaliq, N. W. Gouwens, and I. M. Raman
The Contribution of Resurgent Sodium Current to High-Frequency Firing in Purkinje Neurons: An Experimental and Modeling Study
J. Neurosci., June 15, 2003; 23(12): 4899 - 4912.
[Abstract] [Full Text] [PDF]


This Article
Right arrow Abstract Freely available
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Right arrow Citation Map
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Web of Science (48)
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Golowasch, J.
Right arrow Articles by Marder, E.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Golowasch, J.
Right arrow Articles by Marder, E.


HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
Visit Other APS Journals Online