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The Journal of Neurophysiology Vol. 87 No. 2 February 2002, pp. 1129-1131
Copyright ©2002 by the American Physiological Society
RAPID COMMUNICATION
1Volen Center for Complex Systems and Department of Biology, Brandeis University, Waltham 02454; and 2Department of Physics, Harvard University, Cambridge, Massachusetts 02138
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ABSTRACT |
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Golowasch, Jorge, Mark S. Goldman, L. F. Abbott, and Eve Marder. Failure of Averaging in the Construction of a Conductance-Based Neuron Model. J. Neurophysiol. 87: 1129-1131, 2002. Parameters for models of biological systems are often obtained by averaging over experimental results from a number of different preparations. To explore the validity of this procedure, we studied the behavior of a conductance-based model neuron with five voltage-dependent conductances. We randomly varied the maximal conductance of each of the active currents in the model and identified sets of maximal conductances that generate bursting neurons that fire a single action potential at the peak of a slow membrane potential depolarization. A model constructed using the means of the maximal conductances of this population is not itself a one-spike burster, but rather fires three action potentials per burst. Averaging fails because the maximal conductances of the population of one-spike bursters lie in a highly concave region of parameter space that does not contain its mean. This demonstrates that averages over multiple samples can fail to characterize a system whose behavior depends on interactions involving a number of highly variable components.
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INTRODUCTION |
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Measurements of neuronal
conductances often exhibit a large degree of variability
(Gardner 1993
; Golowasch et al. 1999
;
Liu et al. 1998
). It is customary to characterize such
data using means and variances. For example, mean conductance values
are typically used to set the parameters of a model constructed to simulate neuronal activity. If the resulting model fails to capture the
behavior of the neuron being modeled, the parameters are normally adjusted within a region characterized by the variances of the measured
values. It has been suggested previously that such a program can fail
(Beer et al. 1999
; Foster et al. 1993
;
Goldman et al. 2001
). Here we present an example that
illustrates this problem and suggests when it will occur. We use a
population of model neurons as our data and show that a model built
with parameters set to averages of the corresponding conductances, or
to most of the values within a 1 SD covariance ellipse about the mean, fails to match the behavior of the neurons that were used to generate the data. In this example, averaging fails not as a result of measurement error, but because the distribution of data points is
poorly characterized by its mean and variance or even other higher
order statistical measures. Specifically, the mean and most of the 1 SD
covariance ellipse do not lie within the distribution from which they
are computed.
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METHODS |
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Electrophysiology
Experimental methodology follows that described previously
(Golowasch et al. 1999
). We used two-electrode voltage
clamp to measure the peak conductances of three
K+ currents (IKd,
IKCa, and IA) expressed
in isolated inferior cardiac (IC) neurons of the stomatogastric
ganglion of the crab Cancer borealis. The IC neuron was
isolated by adding 10
5 M picrotoxin (PTX) and
10
7 M tetrodotoxin (TTX) to the bath. Peak
conductances were calculated at +20 mV, assuming a potassium reversal
potential of
80 mV. Currents were separated as described previously
(Golowasch et al. 1999
).
Model description
A single compartment conductance-based model was built using
standard Hodgkin-Huxley equations to describe five voltage-dependent conductances (Na+ conductance, gNa;
delayed-rectifier K+ conductance, gKd;
A-type K+ conductance, gA;
Ca2+-activated K+
conductance, gKCa; and Ca2+
conductance, gCa) and a fixed voltage-independent leak
current. The kinetics and voltage dependence of these conductances are based on measurements performed on cultured stomatogastric ganglion (STG) neurons (Turrigiano et al. 1995
) and are exactly
as described in Liu et al. (1998)
. In our model, we
fixed the ratio of the maximal conductances of the fast and slow
Ca2+ currents (CaT and CaS in Liu et al.
1998
) at 1.25. Values reported are for the fast component only.
Buffering of Ca2+ (used in computing
IKCa) follows the model described previously (Liu et al. 1998
), but with a buffering time constant of
200 ms.
We chose maximum conductances for the currents randomly from uniform
distributions over the ranges (in mS/cm2):
gmaxNa, 0-800;
gmaxKd, 0-200;
gmaxCa, 0-5;
gmaxA, 0-75;
gmaxKCa, 0-300; gLeak,
fixed at 0.01. These distributions all have SD to mean ratios of
1/
3, which sets the scale for the variability seen in the model. The
model was integrated numerically using a second-order accurate, stable
method with adaptive step size.
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RESULTS |
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Each class of identified neurons of the crustacean STG displays a
characteristic and stereotyped firing pattern. Nonetheless, voltage-clamp measurements of three K+ currents
show a three- to fourfold variability in peak conductance (Fig.
1). To mimic the variability seen in such
conductance data, we built 2,000 model neurons by randomly choosing
sets of maximal conductances (Bhalla and Bower 1993
;
Foster et al. 1993
; Goldman et al. 2001
)
for the 5 voltage-dependent currents of the model (METHODS). We classified the resulting patterns of activity
as silent, tonically firing action potentials, or bursting with a certain number of spikes per burst. From these runs, we found that 164 model neurons fire one spike per burst, and we used these as our set of
"identified one-spike bursting neurons" (Fig.
2A, traces 1-3
represent 3 examples). The one-spike bursters display similar firing
patterns (Fig. 2A, left) despite having very different maximal conductances (Fig. 2A, right).
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We used the conductance data from these one-spike bursters to represent recordings from the same identified neuron in different preparations. Conventionally, these data would be used to construct a single model neuron with maximal conductances equal to the averages of the measured values. Following this procedure, we built a model neuron using the average maximal conductances of our 164 model neuron set. Surprisingly, this average model is not itself a one-spike burster, but instead is a three-spike burster (Fig. 2B). Moreover, we found that only 28% of 500 additional model neurons constructed from randomly sampled points within the 1 SD ellipse defined by the covariances of the sampled one-spike bursters were themselves one-spike bursters (a 2-dimensional projection of this ellipse is shown in Fig. 3A).
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Figure 3 illustrates why averaging fails in this case. Figure 3A shows the Na+ maximal conductance, gmaxNa, and the delayed rectifier K+ maximal conductance, gmaxKd, of all of the bursting neurons from the 2,000 runs of the model. The one-spike bursters (Fig. 2A) are shown in blue, while multiple-spike bursters (Fig. 3B) are colored according to their number of spikes. The one-spike bursters are defined almost exclusively by low values of gmaxNa and/or gmaxKd (Figs. 2A and 3A). As a result, their maximal conductances lie in an L-shaped (concave) region. Consequently, in this data set, the mean (red square with cross in Fig. 3A) and most of the points within 1 SD of the mean (black ellipse in Fig. 3A) fall outside the concave region defining the one-spike bursters. Figure 3C shows distributions for gmaxNa and gmaxKd alone and demonstrates that the 164 one-spike bursters do not fall into 2 separate classes on the basis of single-conductance measurements.
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DISCUSSION |
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The essential feature that leads to the failure of averaging in
this study is the concave, L-shaped region of parameter space occupied
by the one-spike bursters. This shape defines a nonlinear relationship
between the values of gmaxNa and
gmaxKd that is not captured by
standard statistical measures such as means and variances (Fig.
3A). The averaged model (Fig. 2B) fails because
the process of averaging does not account for this nonlinear
relationship (Beer et al. 1999
; Foster et al.
1993
; Goldman et al. 2001
). Variances fail to
describe the relationship between
gmaxNa and
gmaxKd because they only characterize
variability of linear combinations of parameters that are assumed to be
independent. Multimodal distributions of individual variables might
serve as an indication that averaging may fail. However, unimodal
distributions, such as those in Fig. 3C or even normal
distributions, can lead to a failure of averaging, due to correlations
not revealed by the individual distributions. This happens, for
example, if the values near the mean of one variable are correlated
with values within the tails of the distribution for a second variable.
Capturing the nonlinear relationships between system components may be essential for understanding system function in many biological systems. In the case of our model, individual measurements of gmaxNa in one group of cells and of gmaxKd in another group only reveal a tendency for each conductance to have low values (Fig. 3C). Simultaneous measurements of these conductances in each cell studied (Fig. 3A) reveal that gmaxNa and gmaxKd act together as a switch between single- and multi-spike bursting, with multi-spike bursting arising only when gmaxNa and gmaxKd are both sufficiently large (enough fast inward Na+ current to produce a 2nd action potential within the burst and enough fast outward K+ current to repolarize the cell, allowing the 2nd action potential to be produced).
The issues raised by this paper are not specific to biophysical
measurements of conductances in neurons or to the construction of
neuronal models; they may be relevant to understanding many complex
biological systems (Koch and Laurent 1999
; Weng
et al. 1999
). We do not know how frequently averaging will fail
in complex systems, but it may occur more often than is typically
suspected (Beer et al. 1999
; Chiel et al.
1999
; Foster et al. 1993
). Perhaps some of the
fine tuning required to make models reproduce experimentally observed
activity may be correcting for failures of averaging rather than
measurement errors. Of course, using averaged parameters in models
often works well. In our example, averaging fails for one-spike
bursters but works for multiple-spike bursters in the sense that a
model built by averaging parameters over all n-spike bursters (for n > 1) produces n spikes per burst.
Averaging will fail whenever the mean of the distribution of relevant data points lies outside the region they occupy. Standard statistical measures do not indicate when this occurs because they do a poor job of characterizing the boundary of a region. However, scatter plots of the relevant parameters, as used here, should be sufficient to reveal a failure of averaging by showing regional boundaries. To characterize a system when averaging fails, it is critical to measure multiple system components together in the same preparation, even though this may be technically challenging. When simultaneous measurements are not available, modeling studies can help uncover the relationships between model parameters that must be characterized to account for observed system behavior.
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ACKNOWLEDGMENTS |
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This work was supported by National Institute of Mental Health Grant MH-46742, the Sloan-Swartz Center for Theoretical Neurobiology at Brandeis University, and the W. M. Keck Foundation.
Present address of M. S. Goldman: Brain and Cognitive Sciences, MIT, E25-210, Cambridge, MA 02139.
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FOOTNOTES |
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Present address and address for reprint requests: J. Golowasch, Rutgers University, Dept. of Biological Sciences, 101 Warren St., Newark, NJ 07102 (E-mail: golowasch{at}stg.rutgers.edu).
Received 18 May 2001; accepted in final form 5 October 2001.
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