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1University/ETH Zurich, Institute of Neuroinformatics, Zurich, Switzerland.; 2International School for Advanced Studies, Cognitive Neuroscience Sector, Trieste, Italy; 3Max Planck Institute for Biological Cybernetics, Physiology of Cognitive Processes, Tubingen, Germany; and 4University of Osnabruck, Institute of Cognitive Science, Department of Neurobiopsychology, Osnabruck, Germany
Submitted 19 October 2005; accepted in final form 29 November 2005
| ABSTRACT |
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| INTRODUCTION |
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The nature of the signals present in the whiskers is of interest for several reasons. First, whiskers carry out a signal transformation, acting as the interface between external objects and sensory receptor neurons. Whereas in visual system it is readily apparent that sensory receptors transduce the energy of photons, such a straightforward statement cannot be made for the whisker sensory system. To probe a texture, rodents actively move their whiskers at a frequency of
512 Hz (Carvell and Simons 1990
, 1995
; Harvey et al. 2001
). Signals arising from contact with the object surface are conducted toward the follicle, where the primary sensory neurons are situated. In this process, the mechanical properties of whiskers modify the signals in ways that are only recently beginning to be understood (Fend et al. 2003
; Hartmann et al. 2003
; Neimark et al. 2003
). Second, the features of the signals that reach the whisker follicle can give us indications of what to expect in neuronal processing. If sensory processing mechanisms have evolved to take advantage of the most informative features of the physical signal, then identifying those informative features will lead us to more precise hypotheses about neuronal processing mechanisms.
In this study, we investigate which features of the whisker movements are best suited for the discrimination of textures. We use a hardware model of a whisker system as well as in vivo measurements of rat whiskers. Applying a classification algorithm to the power spectra of whisker movements, we identify vibration features which could be extracted to support optimal performance. This leads to a model of texture discrimination that is, we argue, corroborated by recent electrophysiological experiments (Arabzadeh et al. 2005
).
| METHODS |
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RECORDING SETUP. To probe textures, rodents actively move their whiskers across them. We simulated this process using metal whiskers (steel wire, Fig. 1A; Small Parts, Miami Lakes, FL) fixed at one end to a sensor head (Fig. 1, B and C), which was mounted perpendicularly to the rotation axis (Fig. 1, B and C). With the use of a servo motor (Digital Servo S9251, Futaba, Huntsville, AL), the whisker could be swept back and forth (Fig. 1B). The motor was controlled by a microprocessor (Atmega163, Atmel, San Jose, CA) interfaced via a serial port to a PC. The whisking frequency was set to 1 Hz, where one sinusoidal cycle was a complete back-and-forth movement.
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ARTIFICIAL WHISKERS. The set of artificial whiskers consisted of 4 metal whiskers with the same diameter (0.305 mm) but different length (W94: 94 mm; W88: 88 mm; W77: 77 mm; W73: 73 mm). To determine the fundamental resonance frequencies and the damping coefficients as two characteristic features for each whisker, we fixed one end and then deflected and released the free tip, fitting a damped oscillation to the resulting motion. The resonance frequencies of the whiskers under these conditions ranged from 20 to 40 Hz (W94: 23.9 Hz; W88: 27.2 Hz; W77: 35.3 Hz; W73: 40.1 Hz) and the damping coefficient was 1.1 ± 0.15 (SD) s for all whiskers. However, these values do not apply to the more complex boundary condition that occurred while sweeping a whisker across a texture; in that case, the whisker was partly fixed at the "free" end.
TEXTURES. We recorded whisker movements across eight sandpapers of different coarseness. Coarseness is routinely defined by the P value, a standard measure of grain size and density (http://www.fepa-abrasives.org/). The eight sandpapers (and average grain diameter) were P40 (425 µm), P60 (269 µm), P80 (201 µm), P100 (162 µm), P120 (125 µm), P150 (100 µm), P180 (82 µm), and P240 (58.5 µm).
PROCESSING OF METAL WHISKER SIGNALS. Whisker movement resulted in a superposition of the deflection signal and the earth magnetic field. To correct for the earth magnetic field, we measured its contribution at each motor position and subtracted it from the total recorded signal. In one whisking cycle, a whisker moved across the surface two times, analogous to the protraction/retraction cycle in natural whisking. Around the inflection points, where the movement direction reversed, the metal whiskers did not contact the texture but oscillated at their resonance frequency (Fig. 1D). Using motor position as a reference, we discarded these segments and selected those when the whisker touched the texture (gray shading, Fig. 1D). We refer to these as sweeps. The two directions were treated separately and gave equivalent results; analyses are based on sweeps in one direction only. After low-pass filtering (150 Hz; chebyshev type II filter of 5th order) and subtracting a polynomial of third order, we applied a Hanning window (raised cosine window) and zero padding (adding zeros in the temporal domain to increase the frequency resolution), and then calculated the power spectra.
In vivo recording
RECORDING SETUP.
The data were originally collected as described in Arabzadeh et al. (2005)
. Experiments were conducted in accordance with National Institutes of Health and institutional standards for the care and use of animals in research. Subjects were 10 adult male 250 to 350 g Wistar rats anesthetized with urethan (1.5 g/kg), and data are presented from one case with the most complete stimulus set; the whisker in this dataset was C3. "Electrical whisking " (Brown and Waite 1974
; Szwed et al. 2003
) was generated by stimulating the right facial nerve (Fig. 1E) with 1 to 2 V pulses of 100 µs at 200 Hz for 60 ms to produce whisker protraction, followed by a passive 65 ms whisker retraction (also see Fig. 1 in Arabzadeh et al. 2005
). The angle traversed at the whisker base, averaged across all trials and all textures, was 25 ± 6.1° (mean ± SD). Horizontal and vertical movements at the base were registered by a two-channel optical sensor, each channel consisting of a light-emitting diode (LED) light source and phototransistor. The two voltage signals were digitized (7,634 samples/s). Whisker movement was recorded in contact with five surfaces of different coarseness for 10 min each [compact disk and 4 sandpapers: P1200 (15.3 µm), P400 (35.0 µm), P280 (52.2 µm), P100 (162 µm); Fig. 1F illustrates P280 and P400].
PROCESSING OF IN VIVO WHISKER SIGNALS.
We examined the principal direction of whisker movement, corresponding to the horizontal forward- backward axis. Movement in this axis contained all the texture-specific signals (Arabzadeh et al. 2005
) and allowed an analysis in one dimension, similar to that of the metal whiskers (Fig. 1G). We extracted 300 protraction and retraction segments for each texture (illustrated by gray backgrounds in Fig. 1G). After band-pass filtering (cut off frequency 30 Hz, 150 Hz; chebyshev type II filter of 5th order), we applied a Hanning window, zero padding, and then calculated the power spectra.
Classification
The whisker movements in each sweep across a texture were characterized by their power spectrum, a good representation of whisker kinetics (see Fig. 1, Arabzadeh et al. 2005
). However, the frequency resolution and the wide frequency band investigated yielded vectors of several hundred dimensions, unsuitable for classification. To estimate the classification performance supported by whisker movements power spectrum, we reduced the dimensionality of the data using the generalization of Fishers linear discriminant to multi dimensions (Fisher transform), applied density estimation, maximum likelihood classification and then documented the results as hit-matrices, fraction correct classified and mutual information. The steps are next described in detail.
GENERALIZATION OF FISHERS LINEAR DISCRIMINANT (FISHER TRANSFORM).
The Fisher transform finds a linear projection such that the classes are best separated (Bishop 1995
). This is achieved by maximizing the product of the between-class scatter matrix (SB) and the inverse of the within-class scatter matrix (SW)
![]() | (1) |
![]() | (2) |
PARAMETRIC DENSITY ESTIMATION.
We approximated the probability distribution of feature vectors pertaining to each texture class by a multi-dimensional Gaussian (n dimensions). Given a set of feature vectors xst, e.g., the vector components after the Fisher transform, relating to texture t and sweep s, we computed the class specific means µt and covariance matrices
t. This yields an estimation of the probability distribution of the feature vectors for each class
![]() | (3) |
CLASS ASSIGNMENT.
For classification, we randomly select two disjoint subsets: 100 sweeps for the metal whisker data, 150 sweeps for in vivo data. One subset was used to compute the Fisher transform and to estimate the class probability densities (training). The second subset was used to measure performance. Each sample feature vector of the validation set was then assigned to the texture class with the maximum likelihood
![]() | (4) |
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![]() | (6) |
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All data processing was in MATLAB (http://www.mathworks.com).
| RESULTS |
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Texture-induced vibrations in the hardware model
We analyzed two blocks (B1, B2) of 100 sweeps for each of the eight textures (18) and four whiskers (W94, W88, W77, W73) summing to a total of 6,400 sweeps. An example of two sweeps of the shortest whisker (W73) across the coarsest (8, P40) and the finest sandpaper (1, P240) is shown in Fig. 1D. The gray shading indicates the period of interest, where the whisker contacted the texture. In Fig. 2, additional stages of signal analysis are shown for whisks on texture 8. The bending of the metal whisker during the sweep becomes evident (Fig. 2A, slow shift in red signal); it can be approximated well by a third-order polynomial (Fig. 2A, black curve). Because the slow bending parameters were characteristic of a given whisker and its position relative to the texture but not the texture surface, this signal was extracted and was not further analyzed. Once the texture-independent bending was subtracted from the raw signal, the residual signal contained higher frequency components (Fig. 2A, green signal). The power spectrum of the raw signal is illustrated in Fig. 2B by the red line. The spectrum is also shown broken down into its components: the bending signal (texture-nonspecific) composed of very large power at frequencies up to
20 Hz (Fig. 2B, black area) and the residual signal (Fig. 2B, green plot). Thus the separation into bending and residual components corresponded to low- and high-pass filtering, respectively, of the total signal. The peak corresponding to the strongest component in the power spectrum is marked by a blue asterisk. To what extent does the peak of the power spectrum reflect the characteristics of the raw signal? To answer this question, the inset of Fig. 2B shows the residual signal (green trace, carried over from A) overlaid (blue trace) by the 27-Hz predominant frequency component in the signal. This illustrates how the peak value of the power spectrum (asterisk) captured the critical temporal patterns within the raw signal.
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150 Hz. Quantifying texture discrimination performance
To quantify the performance we randomly chose distinct subsets of 100 sweeps for training and validation. The parameters for classification were established on the training set. The performance was than evaluated on the validation set (see METHODS). This process was repeated 20 times. Classification is documented by hit-matrices, correct classification percentage, and mutual information.
Overall, classification performance among eight textures using the modulation power spectrum was
39% correct (chance performance = 12.5%) with a mutual information of 0.83 bits (upper limit = 3 bits). Performance also varied slightly across whiskers (W94: 36%; W88: 40%; W77: 36%; and W73: 47%). The SD of the classification across repeated tests was low (maximum: ±3%), indicating the robustness of the classification algorithm. The hit-matrices (Fig. 3A) reveal that misclassification mainly resulted from confusing textures of similar coarseness. Averaging of all whiskers (Fig. 3B) shows that 47% of all errors arose from confusing neighboring textures (chance: 25%). The total number of neighbors with a certain distance decreases with the distance (e.g., 14 neighbors of distance 1 but just 2 neighbors of distance 7); to account for this, in Fig. 3C, we show mean error probability for each distance. Chance corresponds to equally distributed errors (dotted line). This reveals that the classifier extracted coarseness of the surfaces, capturing the inherent order in this feature. In other words, the power spectrum classifier was measuring the P rating of each texture. Discriminating between just the coarsest and finest textures (8 and 1) yielded a performance of 93% and a mutual information of 0.69 bits (upper limit = 1 bit). Thus the information in the modulation power spectrum of one sweep with one whisker was sufficient to support above-chance discrimination between textures of similar coarseness and to reliably discriminate between a coarse and a fine texture.
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Behavioral studies reveal that rats, while probing textures in a discrimination task, contact the surface with many whiskers over several whisking cycles (Carvell and Simons 1990
). Thus rats might normally reach optimal performance by combining the signals from different whiskers (spatial integration), while collecting data over time (temporal integration). To learn more about how performance could be improved through spatial and temporal integration, we combined the signals acquired from multiple whiskers and multiple sweeps. With a single whisker, the performance using two, three, and four sweeps was 48 ± 6, 55 ± 6, and 59 ± 6%, respectively. This corresponds to a relative performance increase (see METHODS) of 29, 55, and 69% compared with that of a single sweep. Thus increasing the number of whisking cycles is a potentially powerful way to increase the performance.
We also measured the classification performance using several sweeps from distinct whisker/direction combinations. For four whiskers and two directions there exist 28, 56, and 70 possible combinations of two, three, and four sweeps, respectively. The average performance was 50 ± 4, 57 ± 4, and 62 ± 5% corresponding to a relative performance increase of 36, 62, and 80% compared with a single sweep. Similarly to temporal integration, each additional whisker added progressively less performance improvement. However, the average performance increase achieved by spatial integration was greater than that achieved by temporal integration.
Features of the power spectrum that support texture discriminability
In the previous section, we illustrated classification performance based on the complete modulation power spectrum over the range 20150 Hz. Next, we investigated whether some subset of spectral features was particularly relevant in the classification process. The approach was to look for the texture-specific differences in the power spectra. We compared the power spectra averaged over all sweeps (shortest whisker: W73, Fig. 4A). The most evident texture-related difference was the total modulation power in the signal, i.e., the area below the curves. Vibrations induced by coarse textures had high modulation power, while vibrations induced by fine textures had low modulation power. To look for other potentially informative features, we then normalized the area under the curve of all the spectra, thereby excluding modulation power as a feature (Fig. 4B). After this normalization, the peak of the power spectrum emerged as an informative feature: it was at low frequencies for coarse textures and at higher frequencies for fine textures. This could result from the whiskers performing many small jumps while sweeping across a fine texture and fewer, larger jumps across coarse textures. We quantified this feature as the modulation centroid
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Texture signals in rat whisker vibrations
We now turn to the whisker signals recorded during whisking in anesthetized rats (Fig. 1, EG). We used 300 whisks across each of five textures of different coarseness (see Fig. 1G for example traces). Similar to the artificial whisker, we extracted the modulation signal by high-pass filtering the whisker movement signal. We separated the protraction and retraction phases of each whisk (Fig. 1G, gray shadings) and performed the complete analysis for both phases. Results were qualitatively similar for the two phases, although discrimination performance was slightly lower for the protraction phase. This can be understood by the more structured whisker velocity profile in retraction compared with protraction (see Fig. 1G and Fig. 1B in Arabzadeh et al. 2005
). For these reasons, here we concentrate on the whisker retraction results.
Figure 4D shows the average power spectrum of the retraction phase for all five textures. The plotted part of the spectrum (30150 Hz) covers most of the power (>90%). Just as for the artificial whiskers, the modulation power increased with the coarseness of the texture, whereas the modulation centroid in the normalized power spectrum (Fig. 4E) decreased with the coarseness of the texture. Figure 4F shows all sweeps from each texture and the texture means in the space spanned by modulation power and modulation centroid. Except for neighboring textures on the coarseness scale, the sweeps were well separated.
To quantify the reliability afforded by power and centroid, we compared the classification performance based on the whole power spectrum to the classification performance based on just these two features. More precisely, we split the 300 sweeps across each texture randomly into training and validation sets of 150 sweeps each. The classification was performed 20 times, and the mean ± SD of correct performance were derived. Using the whole power spectrum, the performance was 91 ± 1%, whereas using the modulation power and centroid yielded 78 ± 1% correct classified. The modulation power and centroid thus captured, by themselves, 83% of the texture discrimination performance available in the whole power spectrum.
Model of signal processing in the somatosensory system
Motivated by the finding that approximately three-fourths (>80% for real whiskers) of the texture information could be captured by the modulation power and centroid, we propose a model for simple and rapid texture discrimination applicable to both the metal whiskers and the natural whiskers (Fig. 5). First, the signal is band-pass filtered to extract the relevant modulation signal (in the case of metal whisker:
20 and 150 Hz cut-off frequencies, real whisker: 30 and 150 Hz cut-off frequencies). Measuring the power in the band-pass filtered signal gives the modulation power. In parallel, the temporal derivative of the band-pass filtered signal is taken, which corresponds to multiplication of the power spectrum by f2. Determining the power of the velocity signal and normalizing it by the total power in the high pass filtered signal yields the modulation centroid. Thus the main features contributing to texture discrimination, under these experimental conditions, can be extracted by three simple operations: band-pass filtering, temporal differentiation and normalization. In the DISCUSSION, we will explore the possibility that neuronal activity observed in the rat whisker sensory system (Arabzadeh et al. 2005
) is a representation of these two whisker vibration features.
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| DISCUSSION |
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80% of trials for real whiskers and 40% for metal whiskers. As shown for the metal whiskers, this performance can be improved by combining the signals from different whiskers (spatial integration) and by collecting data over several sweeps (temporal integration). Because sensory systems may optimize discriminations by transmitting only the most relevant stimulus features to the brain, we asked whether the power spectrum could be reduced to some fundamental features while still allowing reliable classification. The modulation powerthe power of the part of the whisker movement representing the modulation due to the texture surfaceincreased with the coarseness of the texture. The modulation centroid, a measure related to the center of gravity within the power spectrum, decreased with the coarseness of the texture. After condensing the power spectrum to modulation power and modulation centroid, the classification algorithm retained approximately three-fourths of its discriminative performance. Thus as few as two features of whisker movements carried the bulk of the information necessary to discriminate among candidate textures.
We analyzed two different types of whiskers, metal whiskers and rat whiskers, in vivo. Metal whiskers provided a controlled setup to allow highly reproducible recording of whisker movements. In contrast to real whiskers, metal whiskers do not change their properties due to abrasion or ageing and are unaffected by changes in humidity or temperature. Therefore they are more applicable to artificial sensing systems. On the other hand, the in vivo setup aimed at providing realistic natural signals, simulating the whisker movements in the living animal. However, it should be noted that the whisker movements induced by electrical whisking differ from those in awake behaving animals. For instance, in awake animals, the whisker kinetics might be affected by the muscle force applied to the follicle; moreover, the sensory signals picked up by the whiskers appear to lead to rapid modulation of the motor output (Ahissar and Kleinfeld 2003
).
For the metal whisker setup, we used eight relatively similar sandpapers, therefore creating a difficult classification problem. In contrast, for the real whisker setup, we used five different textures with more pronounced differences. A direct quantitative comparison of the performance is therefore not possible. Moreover, in both conditions, we measured the percent of correct discriminations among a large number of textures; in behavioral situations, discriminations are commonly made between just two possible stimuli (e.g., forced choice paradigm). Percent correct would be much higher if discriminations were considered between stimulus pairs (also see the following text).
Regardless of the exact parameters of the stimulus set, the fact that the general findings are true for both a natural whisker in vivo and a metal whisker suggests that a whisker need not possess special mechanical properties to generate texture-specific vibrations. Indeed for whiskers of widely differing properties, the sensory system could discriminate textures by performing band-pass filtering (including temporal derivatives) and division operations.
Emerging picture of texture discrimination
To discriminate textures, rodents use active whisking. Previous studies that analyzed the properties of whisker vibrations used passive stimulation of whiskers (Arabzadeh et al. 2003
, 2004
, Hartmann et al. 2003
; Neimark et al. 2003
). Passive stimulation by a piezoelectric wafer or by a rotating drum has the great advantage of characterizing the system in a steady state. However, potentially important properties of active whisking are neglected, such as the continuous change in geometry of the whisker relative to the texture. Furthermore, under more natural whisking conditions, the contact point of the whisker with the surface and the forces at the contact point are likely to change continuously, producing a dynamic modulation of the mechanical properties of the system. Here, the whiskers were moved forth and back across textures in an attempt to mimic the dynamics of natural whisking.
The general picture that emerges from the present experiments is that large quantities of information can be introduced into the sensory system through a single whisker. Consistent with this proposal, behavioral experiments demonstrate that the performance of rats in a difficult texture discrimination task remains intact even when the whiskers are clipped from the normal complement of >30 down to 2 (Carvell and Simons 1995
). Our results do not rule out the possibility that rats exploit the gradient of mechanical properties across the whisker array, as proposed in the "resonance frequency hypothesis" (Andermann et al. 2004
; Hartmann et al. 2003
; Metha and Kleinfeld 2004
; Moore 2004
; Neimark et al. 2003
). However, we did not observe prominent resonance frequencies within the analyzed range that carried most power (
150 Hz). This might be due to the difference between active and passive whisking discussed in the preceding text.
Relation to behavioral evidence
How does the observed classification performance compare with other available behavioral evidence? In many texture-discrimination tasks, rats decided where to continue at a Y junction based on texture cues (Carvell and Simons 1990
; Guic-Robles et al. 1989
). In these experiments, the decision was based on a stimulus set of two textures appearing with equal probability, which corresponds to a maximum available information of 1 bit. The difference of the texture cues ranged from smooth surface versus surface with 30-µm grooves spaced 90 µm (Carvell and Simons 1990
) to two sandpapers with grain diameters of 400 versus 2,000 µm (Guic-Robles et al. 1989
). The behavioral performance discriminating such stimuli was 85% in both studies. The artificial whisker set up in the present study used eight sandpapers with grain diameters ranging from 59 to 425 µm, whereas the four sandpapers and the compact disc in the in vivo recording ranged from smooth (no structure) to 162-µm grains. For a direct comparison, we consider the discrimination performance for the most extreme stimuli. Using the model based on modulation power and centroid on the movements of one whisker in a single trial to classify the coarsest from the finest sandpaper, we observe an average performance of 89% with the artificial whisker and a performance of 95% with the rat whisker. Thus the behavioral performance of the rats is compatible with the results of the simple model proposed here.
Relation to electrophysiological evidence
Many electrophysiological experiments have been performed to reveal the encoding and transformation of whisker deflections along the whisker pathway from the primary stage, the trigeminal ganglion neurons, to barrel cortex. Trigeminal ganglion neurons reliably encode the kinetics of the whisker movement at a very high temporal resolution (Arabzadeh et al. 2005
; Deschenes et al. 2003
; Gibson and Welker 1983a
,b
; Lichtenstein et al. 1990
; Shoykhet et al. 2000
). More specifically, how does electrophysiological evidence from the whisker system relate to the two features, modulation power and centroid? Neurons in the trigeminal ganglion and the barrel cortex of anesthetized rats, when presented with the stimulus set analyzed here, encoded the "equivalent noise level" (ENL) of the texture-induced vibration in their mean firing rates. The neurons encoded the temporal structure of the vibrationthe time difference between the high-velocity eventsby a matching response probability profile (Arabzadeh et al. 2005
). The ENL is mathematically analogous to the product of modulation power and modulation centroid (Fig. 5, *) and could be extracted by upstream neurons via spike count of barrel cortex populations across the whisker sweep.
In summary, the recent electrophysiological experiments support the view that the modulation power and modulation centroid are reflected in neuronal activity and could be extracted explicitly by neurons upstream of barrel cortex.
| GRANTS |
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| FOOTNOTES |
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Address for reprint requests and other correspondence: J. Hipp, Institute of Neuroinformatics, University/ETH Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland (E-mail: joerg{at}ini.phys.ethz.ch)
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