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Department of Biomedical Engineering, University of Utah, Salt Lake City, Utah
Submitted 29 November 2006; accepted in final form 11 November 2007
| ABSTRACT |
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| INTRODUCTION |
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Neural codes can be divided, somewhat artificially, into two classes: 1) population codes, which depend on which neurons are activated (e.g., labeled-line codes), and 2) temporal codes, which depend on how a given population of neurons is activated (Rieke 1997
). A simple temporal code is a rate code, in which increases in neural firing represent increases in a given stimulus parameter. More sophisticated temporal codes depend on the pattern, rather than overall rate, of neural firing. Recently, contextual spike-timing relationships involving firing patterns across groups of neurons have received increased attention. Synchronization of firing represents the best-studied example. Here, information is represented not in the discharge rate or pattern of a single neuron, but in the near-coincident (synchronous) discharge of two or more neurons. Synchrony has been implicated in a variety of sensory and motor processes as well as higher-order cognitive processes such as learning (Fries et al. 1997
; Gelperin 2001
; Haig et al. 2000
; Konig and Engel 1995
; Singer 1993
; Stopfer et al. 1997
; Vaadia et al. 1995
), but it has remained difficult to document the causes or consequences of synchrony in a detailed mechanistic way, and its relevance remains controversial, at least to some (Farid and Adelson 2001
; Shadlen and Newsome 1994
).
Contextual spike-timing codes are distinct both from rate codes and from pattern timing codes that consider only a single neuron's firing in isolation; such codes instead consider the firing rate and/or pattern of a given neuron, relative to the firings of other neurons. As a more specific example, we consider the effects of spike-timing relationships in the Hermissenda eye, the details of which are provided in a companion paper (Butson and Clark 2008
). Briefly, the Hermissenda eye is composed of two type A cells and three type B cells that are connected with exclusively inhibitory synapses. The firing times of type A and type B cells exhibit contextual spike-timing relationships in both the simulated and biological eyes (Fig. 1), which arise in part because of negative feedback connections. Appropriately timed type A cell spikes delay firing of the next type B cell, placing the B spike in a more effective position to inhibit the next A spike. In this way, the relative spike times of pairs of cells can influence the ongoing spike train of the network.
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In a companion paper we showed that noise paradoxically improves, rather than degrades, the ability of the Hermissenda photoreceptor network to accurately encode light intensity (Butson and Clark 2008
). In the course of ruling out simple explanations, we discovered intriguing patterns in the firing times of cell pairs; specifically, photoreceptors could become phase locked at certain ranges of light intensities, and this effect was modulated by noise. Could these patterns lead to a mechanistic explanation? In this study, we investigate the mechanisms for noise-induced performance enhancement by exploring contextual spike-timing relationships. We conduct this investigation by examining interactions between noise and contextual spike-timing relationships in architectures ranging from open-loop cell pairs to the fully connected, five-cell photoreceptor network. Preliminary reports of these results were previously reported (Butson and Clark 2001
).
| METHODS |
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To explore mechanisms for noise-induced performance improvement, we conducted a series of experiments that looked in detail at spike timing between pairs of cells in architectures ranging from open-loop cell pairs to the fully connected network. In open-loop cell pairs, we searched for domains of stability (DOS) in the spike-timing relationships in which the firing of the postsynaptic cell becomes phase locked to the firing of a presynaptic neuron (Perkel et al. 1964
). Within such a domain, increases in the firing rate of an inhibitory presynaptic neuron can paradoxically increase the firing rate of its postsynaptic target. In contrast, outside such a domain, increases in inhibition decrease the postsynaptic firing rate as expected. Consequently, monotonic changes in the firing rate of a presynaptic inhibitory input can produce nonmonotonic changes in the firing rate of the postsynaptic target neuron. DOS constitute an emergent property of synaptically connected neurons. Interestingly, DOS can occur with excitatory or inhibitory synapses and do not require feedback connections. In the simplest example from the Hermissenda eye, DOS exist at certain combinations of pre- and postsynaptic firing frequencies in a cell pair with a feedforward synapse.
DOS are identified by creating and analyzing delay functions for each type of cell pair (B to A, B to B, A to B), as shown in Fig. 2. In the simplest case of a cell pair with no feedback, the delay function specifies the change in timing of a postsynaptic spike due to a presynaptic spike. They are created by recording pairs of spike times from pre- and postsynaptic cells in the plateau region (last 5 s) of a 10-s light response. The first spike of the postsynaptic cell is fixed at t = 0.0; the arrival time of the presynaptic spike is indicated on the abscissa and the resulting delay in the subsequent postsynaptic spike is indicated on the ordinate. In mathematical terms subsequently used here, the delay function specifies the firing delay f(
) as a function of the inhibitory postsynaptic potential (IPSP) latency
. The delay functions are analyzed to determine the conditions under which DOS can occur (see RESULTS), noting that the delay function can be either an analytical function or a curve derived from experimental data (the latter is used herein). We then look for the presence and effects of DOS on different network architectures. Because DOS depends on the relative firing rates of the pre- and postsynaptic neurons, they represent an example of contextual spike-timing relationships. Here we find that the addition of ionic and synaptic noise weakens DOS, and thereby reduces phase locking and the resultant nonmonotonic effects of changes in firing rate of presynaptic neurons. Consequently, photoreceptors respond more accurately to changes in light intensity.
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| RESULTS |
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Spike times were collected and compiled across many spike pairs. Example intracellular recording traces from the biological and model eye are shown in Fig. 1A, whereas probability distributions for spike firing times for type A to type B cells are shown in Fig. 1B. The biological eye and the simulated noisy eye showed similar A–B spike intervals, indicating that the model accurately represents the firing properties of the system, and that there are emergent spike-timing probability distributions. In the synaptically uncoupled system, this distribution became flat, indicating that the contextual spike timing is an emergent property arising from synaptic interactions, including recurrent negative feedback. Finally, in the noise-free eye, this probability distribution was much more narrow. The sum of these results indicates that contextual spike-timing relationships are an important property of the photoreceptor network and differ between the noisy and noise-free condition, warranting further study.
IPSP timing modulates relative firing rate of postsynaptic cells
Spike-timing relationships in pairs of cells are schematically represented in Fig. 2, which shows delay function curves for IPSPs from presynaptic to postsynaptic cells in an open-loop (no feedback) configuration for A to B, B to A, and B to B cells. In each graph, the postsynaptic cell fires at t = 0.0 and the firing delay of the next spike is indicated as a function of presynaptic IPSP latency. Each delay function curve has two distinct regions. The initial, positively sloping section is the region where IPSPs will delay the firing of the next postsynaptic spike. The final, negatively sloping section results from IPSPs that arrive too late in the interspike interval (ISI) and therefore have little or no effect on the next postsynaptic spike. The delay function has important consequences because if successive IPSPs arrive sooner after t = 0.0 but within the positively sloping region, then the inhibitory input from the presynaptic cell can cause less delay and thus a relative increase in the firing rate of the postsynaptic cell. For example, Fig. 2A shows the delay function for an A cell that is synaptically connected to a B cell. A change in IPSP latency from 0.1 s for the first spike to 0.05 s for the second spike would result in a decrease in the firing delay from 0.057 to 0.028 s, which reflects a relative increase in the firing rate of the B cell. Next we consider what happens if this effect persists in a spike train.
IPSP trains can lead to domains of stability even in open-loop cell pairs
In a continuous spike train, stable patterns can emerge in the firing times of cell pairs even in the absence of feedback. This is best demonstrated when the A and B cells are firing steadily and spontaneously but at slightly different frequencies, as in response to a light stimulus. Under these circumstances, pairs of synaptically connected cells can exhibit nonmonotonic changes in firing frequency (Fig. 3). In this set of graphs, cell pairs consisting of presynaptic B cells and postsynaptic A cells are stimulated with artificial light currents for 10 s. The stimulus intensity delivered to the postsynaptic A cell is fixed, whereas the stimulus to the presynaptic B cell is swept through a range of intensities to produce firing rates that increase from about 3 to 6.5 Hz. The values shown in the graph are the firing frequencies of the cells averaged over the last 5 s of the light step. Because the stimulus to the A cell is fixed but IPSPs are arriving more rapidly as the firing frequency of the B cell increases, one would expect the firing rate of the A cell to decrease as the rate of the B cell inhibitory input increases. However, in the noise-free condition (Fig. 3A), the A cell response becomes strongly nonmonotonic. At relatively low type B cell firing frequencies (<4 Hz), increases in the type B cell spike rate produce modest inhibition of the type A cell firing rate, as expected. As the firing rate of the B cell approaches that of the A cell, however, the A cell rate changes such that it matches the B cell rate in a 1:1 ratio, and the match in firing frequencies is a direct result of phase locking between the two cells, as indicated by the decrease in SD of A cell firing frequency. This ratio persists for a range of presynaptic firing frequencies, first slowing the A cell rate and then speeding up the A cell faster than its original rate. Thus within this DOS, increases in the inhibitory type B cell input can paradoxically increase the type A cell firing rate. Eventually, the A cell can no longer maintain the artificially high firing rate and it drops closer to a value at or below its initial firing rate (leftmost data point in Fig. 3A). Although this effect is most visible at the 1:1 firing rate ratio, these pairs of cells have multiple modes of stable output depending on their relative natural firing frequencies and the strength of the inhibitory connection. DOS can also occur at other integer-multiple frequencies, as will be subsequently shown. Here we have shown that DOS exist and can cause a nonmonotonic relationship between stimulus intensity and firing frequency depending on the rate of inhibitory input.
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. After the arrival of an IPSP, the period is changed to a new value,
', calculated from
![]() | (1) |
) is the delay function from Fig. 2 that provides the delay of the next postsynaptic spike as a function of the latency
of the presynaptic IPSP. For a continuous series of pre- and postsynaptic spikes, Eq. 1 can be used with the delay function to predict a train of periods by solving
' in terms of
,
" in terms of
', and so forth. At this point, it is useful to switch from a time-based frame of reference to a phased-based one, as explained in Fig. 4A. That is, instead of predicting the firing times of the cells, we will attempt to predict the latency of each IPSP. As shown in the figure, the latency of the first spike is
i, and for constant
and
values the latency of the second spike is
![]() | (2) |
is the stable, limiting value of
' (in the case of phase locking,
is equal to the constant firing rate of the presynaptic cell). This equation can be used to iteratively predict the latencies of a train of spikes. From this equation it is clear that for some combination of values of
,
, and f(
), it is possible that
![]() | (3) |
![]() | (4) |

indicates a limiting stable value of
. Thus under this condition the pre- and postsynaptic cells would be phase locked and firing at the same frequency. Our purpose at this point is to show that it is possible for stable phase relationships to occur such that both cells fire at the same frequency. Next we examine the conditions under which the phase locking is stable over a range of firing frequencies, which would lead to a DOS.
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In the previous section we showed that DOS exist in cell pairs, and that phase locking can occur at particular pre- and postsynaptic firing frequencies. Here we examine the conditions under which these phase-locked relationships are stable. For a train of IPSPs, it is possible to write the phase relationships between cells as
![]() | (5) |
i) as
![]() | (6) |
![]() | (7) |

), the proportionality factor can be used to intuit the behavior of the system as described in Table 1. In particular, we can use this equation to determine how the spike latencies change from one spike to the next and therefore how the latencies might evolve to the stable limiting value. Our approach is to assume that a stable phase value 
exists and that the delay function f(
) is well defined at this value [thus f(
) is constant in this equation]. Therefore the only values that change from one spike to the next are the latency
i and the proportionality factor, which depends on the slope of the delay function df(
i)/d
i. The data shown in Table 1 indicate the qualitative behavior of the system in a series of IPSPs, which can be summarized as follows. If the IPSP latency occurs where the slope of the delay function is between 0 and 2, then a stable phase value exists and phase locking can occur; further, if this phase locking persists over a range of firing frequencies, then a DOS will emerge. In contrast, if the slope of the delay function is
0 or
2, then no stable phase value exists and phase locking cannot occur. This analysis can also be extended to predict the stability of firing frequencies at arbitrary integer ratios. Now that we have shown the existence criteria for DOS in the Hermissenda photoreceptor, we will consider the effects of noise.
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We have shown that DOS occur and that their existence can be inferred from the slope of the delay functions for Hermissenda cell pairs. However, the derivation of DOS criteria has assumed constant values for
and
. A logical question arises: what if a certain amount of jitter exists in the firing times of these cells? More specifically, for cells that maintain average values of
and
, what is the effect of variance in the length of each ISI period? We found that variance of sufficient magnitude strongly reduces DOS in cell pairs. Figure 3 shows the firing frequencies of an open-loop cell pair consisting of a presynaptic B cell and a postsynaptic A cell. Each data point in the graphs is a unique combination of A and B cell firing frequencies. In all cases, the A cell is stimulated with an artificial light stimulus that does not change between experiments. In contrast, the B cell is subjected to a range of light intensities that increase incrementally with each experiment. In the absence of any synaptic connections, we would expect the average A cell firing to be virtually identical in each experiment, and the average B cell rate to increase monotonically. In the noise-free condition, we observed the firing rate of the A cell changes considerably as a function of average B cell firing rate (Fig. 3A). In contrast, the noisy condition shows little phase locking (Fig. 3B). With the exception of a small collection of points near the 1:1 line, the B cell does not appear to exert much effect on the A cell, aside from a modest inhibition of the type A cell firing rate. Therefore with variable-interval artificial IPSPs, the DOS observed in the noise-free condition is abolished.
Thus DOS are modulated by noise. Specifically, noise smooths the relationship between IPSP input and output firing rates. These results demonstrate that changes in IPSP timing are sufficient to reduce phase locking in the biological eye. Noise improves performance by interfering with phase locking that occurs in DOS. Moreover, this effect cannot be discerned by looking at firing rates alone or by looking at individual spike pairs. The only way to reach this conclusion is by examining contextual spike-timing relationships between pairs of cells. In the noise-free network, light monotonically increases the firing rate of both type A cells and type B cells. B cell input to the A cell has a nonmonotonic effect, producing both expected decreases and anomalous increases in A cell firing (from phase locking within the DOS). The net output of A cells is a nonmonotonic function of light intensity. By contrast, in the noisy network, light monotonically increases firing rate of both type A cells and type B cells. B cell input to type A cells has a monotonic, inhibitory effect (because the phase locking and anomalous increases are reduced by noise). Thus the net output of A cells is a monotonic function of light intensity.
Feedback reduces convergence time of DOS
The effect of feedback is incorporated using a modified phase-relation diagram as shown in Fig. 4B. In the feedback condition, the nomenclature of pre- or postsynaptic is somewhat arbitrary because it varies on a per-spike basis. Instead, it is useful to simply rewrite the phase relationships on a per-cell basis. Consistent with the analysis provided earlier, the phase relationships for each successive spike for each cell are given by
![]() | (8) |
![]() | (9) |
![]() | (10) |
![]() | (11) |
![]() | (12) |
![]() | (13) |
At this point it would be useful to express Eq. 10 in terms of
and Eq. 13 in terms of
[in other words, remove references to f(
i) and f(
i+1), respectively]. To achieve this, two additional relationships are made for each cell. First, from Fig. 4B the following relationships are written for the periods encompassed by
' and
', respectively
![]() | (14) |
![]() | (15) |
i) and f(
i) are rewritten as [also shown in Eq. 6 for f(
i)]
![]() | (16) |
![]() | (17) |
![]() | (18) |
![]() | (19) |
Now the phase relationships for Cell 1 and Cell 2 can be rewritten. Equations 16 and 18 are substituted into Eq. 10 and rearranged to yield
![]() | (20) |
![]() | (21) |
It is now possible to compare Eqs. 20 and 21 with Eq. 7 to develop a sense of the phase behavior. Specifically, all three of these equations can be expressed in the form
![]() | (22) |
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![]() | (23) |
)/d
], whereas the proportionality factor for the feedback condition is [1 – df(
)/d
]2. Because df(
)/d
is in the stable range (0, 2), [1 – df(
)/d
] is in the range (–1, 1), and the magnitude of the proportionality factor for the feedback condition is smaller than that for the open-loop condition. Therefore the feedback condition converges faster. The stability of the phase relationship for the feedback condition is qualitatively unchanged from Table 1, given that the proportionality factor is now calculated using the expressions in Table 2 that incorporate the delay function slopes for Cell 1 and Cell 2. The effects of feedback can be observed in cell pairs by examining changes in ISI as a function of time. In this analysis the stable ISI was found by running simulations with open-loop and feedback connections in the noise-free condition until the cells converged on a stable phase relationship (10 s was sufficient). Light intensities were chosen such that the mean firing rate in the open-loop and feedback conditions were within 0.05 Hz of each other at the end of the trial. Then, the magnitude difference in ISI between each successive spike pair and the final spike pair was determined and plotted as a function of time, as shown in Fig. 5. These results confirm what we expect from the theoretical analysis: the presence of feedback reduces convergence time of the DOS relative to the open-loop condition.
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In the fully connected network, noise improves performance by interfering with phase locking that occurs within DOS. Figure 6 shows the effects of noise in the fully connected network. In the noise-free condition, phase locking induces a paradoxical increase in type A cell firing rate as A cell and B cell firing rates converge, disrupting light intensity encoding. In the noisy condition, the anomalous increases in type A cell firing are ameliorated by noise. Thus noise alters contextual spike-timing relationships and reduces phase locking. As a result, the performance of the eye in encoding light intensity is improved, enabling the animal to make faster and more accurate measurements of its surrounding environment.
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| DISCUSSION |
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Many investigators have provided evidence of coding schemes beyond rate or population codes. Preliminary support for the existence and importance of contextual spike timing was provided by Segundo et al. (1963)
, who made several observations in the visceral ganglion of Aplysia californica. First, the higher-order statistics of spike arrival times have an important effect on physiological response, even when controlling for mean firing frequency. They asserted that sensitivity to timing could be biologically advantageous, especially in areas of sensory convergence, because it provides an additional coding parameter complementing mean frequency modulation. However, frequency is not an adequate specification or a candidate code—it is really a class of codes. The information relevant to the decoder may be represented by the value of the most recent ISI, or averaged over some period. In fact, over a dozen codes have been identified based on rate alone (Perkel and Bullock 1968
). More recently, neurons in a sensory system have been shown to respond very differently to spike trains with comparable mean firing rates but different statistics (Bialek and Rieke 1992
). Although here we use the term "contextual spike timing" to refer to temporal relationships, Tiesinga and Jose (2000)
make a distinction between strong and weak synchronization. The former requires that spikes occur within a specific time window of each other, whereas the latter is more general. In weak synchronization, the average neuronal activity is periodic, without each individual neuron having to fire at each period. Their experiments on a Hodgkin–Huxley network model of thalamic neurons suggest that weak synchronization is robust against neuronal heterogeneities and synaptic noise, and that it can encode more information compared with strongly synchronized states. They also found that noise amplitudes play an important effect in synchronization: for small networks, more noise is required to drive the subthreshold network into stable oscillations.
Stochastic resonance (SR) is a simple mechanism that has often been used to explain the dynamics of neural systems in the presence of noise. For example, Longtin et al. (1994)
showed conditions under which periodically stimulated neurons can be modeled as bistable systems embedded in noise. More important, they showed that the dynamics of this simple system, which mimic those of ISI histograms from cat and monkey, cannot exist in the absence of noise (Longtin et al. 1991
). The dynamics of noise can also play a critical role in signal processing. Noise sources that are identical, independent, or spatially correlated have been shown to have important differences for stochastic resonance in a network of Hodgkin–Huxley neurons (Liu et al. 2001
). Added internal neuronal noise can improve the timing precision of deterministically subthreshold stimuli, and optimal noise results in maximal improvement (Pei et al. 1996
). By contrast, noise degrades only the timing precision of suprathreshold stimuli. More specific to sensory systems, Collins et al. (1996)
examined SR in rat slowly adapting type 1 afferents with aperiodic inputs. They found clear SR behavior in 11 of 12 neurons tested. In contrast, the phenomenon we report here is independent of SR for two reasons. First, SR is normally associated with perithreshold stimuli, whereas the stimuli used in these experiments are all suprathreshold. Second, the results from SR experiments are well explained by use of a bistable system, where noise facilitates transitions from one state to another. Clearly, the spike-timing dynamics in the Hermissenda photoreceptor cannot be explained by either of these scenarios.
Other mechanisms for the apparent noisiness in neurons have also been proposed. Liebovitch and Toth (1991)
conducted a series of experiments to show that ion channel kinetics can be represented by deterministic chaos rather than a stochastic process. With this representation, the ion channel model is an iterated map that is piecewise linear. Clay and Shrier (1999)
used a Fitzhugh–Nagumo model to show that randomness in ISI can be attributable to deterministic chaos rather than to a stochastic noise source. In our analysis we avoided the use of chaos as a mechanism for two reasons. First, although chaotic behavior can certainly emerge from a system governed by dynamic differential equations, the criteria for the ongoing presence of chaos in such a system are not easily established. Second, and more important, the use of chaos is unnecessary to explain the observed dynamics of the system.
The constructive effects of noise in sensory signal processing has implications for our understanding of neural dynamics, as well as the design of neural interface devices. From the perspective of basic science, the existence of contextual spike-timing codes is an addition to our understanding of the way the nervous system communicates. Contextual spike-timing codes have previously been proposed, such as synchrony in mammalian visual cortex as a potential solution to the "binding" problem. However, it has been difficult to document their importance empirically. The relatively simple neural circuit of the Hermissenda eye has allowed a detailed analysis of both the role of contextual spike timing codes and the mechanisms that underlie their emergence. The existence of this type of code in Hermissenda demonstrates that neural communication depends on well-spaced neural spike times and that it is necessary to measure the relative spike times of multiple neurons to understand this code. The effects of noise as demonstrated herein and in the companion paper are based on an inhibitory-only network. However, the phenomenon is not limited to inhibitory networks. Recent results have shown it to be equally prevalent in excitatory networks (Clark and Legge 2006
); it is also hypothesized to occur in mixed excitatory/inhibitory networks. Preliminary results have been reported for the former (Perkel et al. 1964
) and the implications of the latter could be significant for understanding cortical dynamics. This is particularly interesting in the context of diseases with pathological synchronization such as Parkinson's disease and epilepsy, which might be treated by artificially increasing noise levels.
| GRANTS |
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| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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Address for reprint requests and other correspondence: G. A. Clark, University of Utah, Department of Biomedical Engineering, 20 S. 2030 E., Rm. 506, Salt Lake City, UT 84112-9458 (E-mail: greg.clark{at}utah.edu)
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