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REPORT
Department of Neuroscience, School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania
Submitted 4 December 2007; accepted in final form 31 March 2008
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ABSTRACT |
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INTRODUCTION |
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A KCNQ-like channel from Drosophila, termed dKCNQ, was recently cloned and characterized in our lab (Wen et al. 2005
). There is only one KCNQ-like gene in the fly. Many aspects of the functional properties of dKCNQ have striking parallels with their mammalian orthologs, such as slow activation and deactivation kinetics, and no discernable inactivation. Calmodulin can form a stable interaction with dKCNQ through two binding sites on the C-terminus of the channel and is likely required for channel activity (Wen et al. 2005
).
To search for other binding partners and modulators of KCNQ channels, we performed a yeast two-hybrid screen using the C-terminus of dKCNQ as bait against a Drosophila melanogaster adult Matchmaker cDNA library. We recovered a number of interacting proteins and focus here on one of them, a protein named CG11963, which is orthologous to the beta subunit of mammalian succinyl-CoA synthetase (SCS). Our data identify CG11963 as a novel modulator of the Drosophila KCNQ channel.
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METHODS |
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The yeast two-hybrid screen was performed using the Matchmaker Two-Hybrid System 3 (Clontech), using the entire 543 amino acid C-terminal tail of the Drosophila dKCNQ channel as bait against a Drosophila adult Matchmaker cDNA library. Positive clones were selected on plates lacking adenine, histidine, leucine, and tryptophan and were assayed for
-galactosidase activity. The plasmids of positive clones were isolated from yeast cells and the sequences of the cDNAs were determined.
Cloning of Drosophila CG11963
CG11963 cDNA was cloned and amplified by polymerase chain reaction (PCR) analysis from a Drosophila whole body cDNA library. Primers were designed according to the sequence in GenBank that corresponds to Drosophila CG11963. The forward primer was 5'-CCC CCC GAA TTC ACC ATG GCT TCA TTC TTG GCA CGA ACT GGC-3' and the reverse primer was 5'-TCA GCC GAT CTT GGG AGC GCT GTG-3'. PCR products were sequenced from both directions and cloned into the mammalian expression vectors pcDNA3.1/Myc-his (Invitrogen) for biochemical assays and the pIRES2-EGFP vector (Clontech) for electrophysiological studies. cDNAs encoding dKCNQ were in the pcDNA3.1(+) (Invitrogen) expression vector for electrophysiology and in the pcDNA3.1(+) vector with a FLAG tag at the C-terminus for biochemistry.
Construction and purification of glutathione S-transferase–CG11963 proteins
cDNAs encoding full-length CG11963 were fused to glutathione S-transferase (GST) in the pGEX-4T-1 vector and expressed in Escherichia coli BL21(DE3). Fusion protein was purified using glutathione-Sepharose 4B heads, and then subjected to SDS-PAGE followed by staining with Coomassie blue.
Biochemistry
tsA-201 cells were grown in minimal essential medium supplemented with 10% fetal bovine serum (Invitrogen) plus penicillin and streptomycin (Invitrogen) in 100-cm2 culture dishes. DNA encoding FLAG-tagged dKCNQ in pcDNA3.1(+) and/or Myc-tagged CG11963 in pcDNA3.1/Myc-his were transfected using Lipofectamine 2000 reagent, according to the manufacturer's protocol (Invitrogen). For all constructs, the appropriate empty vector was used as a negative control.
Transfected cells were lysed and proteins were immunoprecipitated from lysates, separated by gel electrophoresis, and transferred to nitrocellulose membranes for Western blotting as described previously (Zeng et al. 2006
). Equal amounts of protein were loaded in each well. Antibodies used for Western blotting and coimmunoprecipitation were purchased from Sigma (anti-Myc M5546 and anti-FLAG F3165).
For biotinylation of cell surface protein, transfected tsA-201 cells were washed twice with ice-cold phosphate-buffered saline (PBS) and incubated with gentle agitation for 30 min at 4°C with 1.0 mg/ml EZ-linkTM sulfo-N-hydroxysulfosuccinimide (NHS)-S-S-biotin (Pierce Biotechnology) in cold PBS as described previously (Wen and Levitan 2002
). Biotinylated proteins (equal amounts loaded in each well) were separated by SDS-PAGE and immunoblotted as above.
Electrophysiology
Chinese hamster ovary (CHO) cells were maintained in F-12K nutrient mixture (Invitrogen) with 10% fetal bovine serum plus penicillin and streptomycin. They were seeded onto glass coverslips in a 35-mm cell-culture dish and transiently transfected using Lipofectamine 2000. Transfections consisted of combinations of dKCNQ in pcDNA3.1(+) and CG11963 in pIRES2-eGFP, or pIRES2-eGFP vector alone.
Standard whole cell patch recordings were performed with CHO cells exhibiting green fluorescence 1 to 2 days after transfection, with an Axopatch 200A amplifier (Axon) and an Axiovert 25 inverted fluorescence microscope (Carl Zeiss MicroImaging). Standard extracellular saline contained (in mM): 140 NaCl, 2.8 KCl, 2 CaCl2, 2 MgCl2, 10 D-glucose, and 10 HEPES (pH 7.2). Standard intracellular saline contained (in mM): 140 KCl, 10 BAPTA, and 10 HEPES (pH 7.2).
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RESULTS |
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The screen of 3,500,000 mating yeast colonies revealed that the C-terminus of dKCNQ interacts with a number of unexpected proteins in the fly proteome. Among them, one was identified as CG11963, the gene for which can be found on Drosophila Chromosome 3R at location 4,764,405–4,768,750. CG11963 encodes a protein with a calculated molecular mass of 54,808 Da that exhibits 59% amino acid identity with the human SCS β subunit. The role of Drosophila CG11963 protein has not been characterized. Moreover, there is no information to suggest that this protein is involved in ion channel modulation, so its binding to dKCNQ is unexpected and of great interest. We cloned CG11963 and tested its ability to modulate dKCNQ.
To confirm and characterize the interaction between CG11963 and full-length dKCNQ channels, we cotransfected FLAG-tagged dKCNQ channels with Myc-tagged CG11963 in tsA-201 cells and performed coimmunoprecipitation experiments. The results of such experiments demonstrate that dKCNQ does interact with CG11963 in transfected tsA-201 cells (Fig. 1A). Considering that CG11963 is orthologous to a mitochondrial matrix enzyme subunit, these results are striking and novel.
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We next investigated the functional consequences of the interaction between dKCNQ and CG11963. We coexpressed CG11963 with dKCNQ channels in CHO cells and recorded dKCNQ whole cell currents. We found that, in the presence of CG11963, the dKCNQ conductance–voltage (G–V) curve is right-shifted by about 10 mV compared with control cells in which only dKCNQ is expressed [from –24.5 mV (n = 18) to –14.6 mV (n = 13) P < 0.05] (Fig. 2, A–D). This change is specific to dKCNQ because CG11963 does not shift the G–V relationship of Drosophila Slowpoke BK (dSlo) (Fig. 2E) or human EAG1 (hEAG) (Fig. 2F) potassium channels. We also used a standard protocol to measure the deactivation of the dKCNQ channel. Channel-expressing cells were initially held under voltage clamp at a relatively depolarized membrane potential (+30 mV in this experiment) and then hyperpolarized to –40 and –60 mV, respectively (Brown and Adams 1980
). Under these conditions, dKCNQ currents deactivate slowly, showing a slow inward current relaxation. We analyzed the closing kinetics of dKCNQ by fitting the deactivating current with two exponential time constants at each voltage. We found no difference between the controls and the cells that were cotransfected with CG11963 (Table 1).
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DISCUSSION |
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CG11963 encodes a protein orthologous to the β subunit of mammalian SCS, a mitochondrial matrix enzyme that participates in the citric acid cycle. SCS catalyzes the reversible synthesis of succinyl-CoA from succinate and CoA (Nishimura 1986
) and its activity is important for metabolism and mitochondrial function. A homozygous disruption in the SUCLA2 (human SCS β subunit) gene was identified in patients with encephalomyopathy and mitochondrial DNA depletion syndrome (Elpeleg et al. 2005
). Surprisingly, surface biotinylation experiments demonstrate that CG11963 protein is located in the plasma membrane even without coexpression of dKCNQ channels. This finding implies a role for CG11963 as a membrane protein. Consistent with our result, analysis of the primary amino acid sequence of CG11963 predicts two potential transmembrane segments [amino acids 294–317 and 348–369; predicted by TMpred—Prediction of Transmembrane Regions and Protein Orientation (EMBnet-CH); Fig. 1C]. Interestingly, CG11963 has an extended C-terminus compared with its mammalian orthologs and there are 23 lysines within this 54 amino acid region (Fig. 1C). This extended C-terminal domain might also contribute to the plasma membrane targeting of CG11963 or its interaction with dKCNQ channels. The β subunit of human SCS does not contain such a lysine-rich C-terminus and we find that it does not modulate human KCNQ2 channels (data not shown).
The function of Drosophila CG11963 has not previously been determined, but our evidence suggests that CG11963 might be a membrane protein capable of modulating the activity of dKCNQ potassium channels. It is interesting that the modulation does not require coexpression of the SCS
subunit, suggesting that SCS enzymatic activity is not involved. This is not the first example of a new function being assigned to an old protein. For example, calreticulin was initially identified as a calcium-binding protein regulating Ca2+ homeostasis in the ER lumen, where the majority of cellular calreticulin is located, but growing evidence indicates that calreticulin is also involved in many other critical functions such as mediating mRNA destabilization in cytoplasm, exerting antithrombotic effects at the cell surface, and modulating cell adhesion (Johnson et al. 2001
; Opas et al. 1996
; Totary-Jain et al. 2005
; Yokoyama and Hirata 2005
).
In summary, we demonstrate here the presence of CG11963 in the plasma membrane and its modulation of dKCNQ channels. Although it is still not known whether CG11963 modulates native dKCNQ currents in neurons, further studies of how the modulation of dKCNQ by CG11963 affects neuronal physiology will lead to better understanding of how neuronal excitability is regulated. Since KCNQ channels are so intimately involved in cardiac and neuronal function, our identification of a completely novel KCNQ modulatory protein extends our understanding of the regulation of membrane excitability and may ultimately have clinical implications.
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GRANTS |
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ACKNOWLEDGMENTS |
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FOOTNOTES |
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The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
Address for reprint requests and other correspondence: I. Levitan, Department of Neuroscience, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104 (E-mail: levitani{at}mail.med.upenn.edu)
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